Hotels in Mission Bay, San Diego

Mon 3/4
Fri 3/8

Search hundreds of travel sites at once for hotels in Mission Bay

...and more

Let KAYAK do the searching

Save on your next stay

Search and compare hundreds of travel sites at once for hotels in Mission Bay

We’re completely free to use – no hidden charges or fees

Best hotels in Mission Bay (San Diego)

Most recommended Mission Bay hotels

Show all
Paradise Point Resort & Spa - San Diego - Bedroom
Paradise Point Resort & Spa
8.1 Very good
Mission Bay1,050 ﷼+
1,050 ﷼+
Free Wi-Fi
Pool
Pet friendly
Air Conditioning
Catamaran Resort Hotel and Spa - San Diego - Patio
Catamaran Resort Hotel and Spa
7.3 Good
Mission Bay1,188 ﷼+
1,188 ﷼+
Free Wi-Fi
Pool
Pet friendly
Air Conditioning
Bahia Resort Hotel
8 Very good
Mission Bay1,087 ﷼+
1,087 ﷼+
Parking
Free Wi-Fi
Pool
Pet friendly
The Dana on Mission Bay
8 Very good
Mission Bay702 ﷼+
702 ﷼+
Pool
Pet friendly
Air Conditioning
Hyatt Regency Mission Bay Spa And Marina
8 Very good
Mission Bay1,049 ﷼+
1,049 ﷼+
Free Wi-Fi
Pool
Pet friendly
Air Conditioning
The Wayfarer San Diego
8.5 Very good
Mission Bay903 ﷼+
903 ﷼+
Free Wi-Fi
Pool
Air Conditioning
Beach Baller Bungalow
3 Poor
Mission Bay1,165 ﷼+
1,165 ﷼+
Free Wi-Fi
1,338 ﷼+
Parking
Free Wi-Fi
Pool
Air Conditioning
Manhattan Shores 1C
Mission Bay1,279 ﷼+
1,279 ﷼+
Free Wi-Fi

How much is a Mission Bay hotel?

Here are our most popular & best value hotels

2 stars and below

3 stars

4 stars and above

Good to know

Low season

November

High season

December

Average price (weeknight)

1,369 ﷼

Average price (weekend night)

1,044 ﷼
Cheapest month to stay with an average 69% drop in price.
Most expensive month to stay with an average 121% rise in price.
Average Sun - Thu price over the last 2 weeks.
Average Fri & Sat price over the last 2 weeks.

When to book a hotel in Mission Bay

Price per night / 3-star hotel. Prices are not fixed and may vary with time.
Average nightly price per month
Average nightly price

Top tips for finding a hotel deal in Mission Bay

  • If you’re looking for a cheap hotel in Mission Bay, you should consider going during the low season. You’ll generally find lower-priced hotels in Mission Bay in August and May.
  • If you’re looking for a bargain then KAYAK data shows that you’ll find the best hotel deals in Mission Bay (San Diego) if you stay on a Friday. On the other hand, the most expensive day for hotel bookings is Saturday.
  • For the lowest prices, try to book your Mission Bay hotel more than 90 days before your stay.
  • Not sure just how much there is to see and do in Mission Bay? KAYAK users usually book their hotel here for 5 days.

FAQs when booking a hotel in Mission Bay

  • What are the best hotels in Mission Bay?

    Mission Bay is a great part of San Diego to make your base. If you’re staying in Mission Bay area then Paradise Point Resort & Spa, Hyatt Regency Mission Bay Spa And Marina, and San Diego Mission Bay Resort are all recommended on KAYAK.

  • How much does a hotel in Mission Bay (San Diego) cost?

    The average price for a hotel room in Mission Bay is 702 ﷼ but our users have found deals for as low as 412 ﷼. However, hotel prices in Mission Bay vary a lot depending on the type of hotel, the time of year and more factors.

  • How much is a hotel in Mission Bay for tonight?

    If you’re looking for a last minute deal, the best price a KAYAK user has found for a 3-star hotel in Mission Bay in the last 3 hours was 847 ﷼ and the lowest priced 4-star hotel was 981 ﷼. The best price found on KAYAK for a hotel room in Mission Bay for tonight is 847 ﷼.

  • How much is a hotel in Mission Bay for this weekend?

    In the last 72 hours, KAYAK users have found hotel deals in Mission Bay for this weekend for as low as 897 ﷼ per night. Users have also found 3-star hotels from 897 ﷼ and 4-star hotels from 1,002 ﷼.

  • Which hotels in Mission Bay are romantic?

    If you’re looking for a romantic break with your partner in Mission Bay, then why not stay at The Dana on Mission Bay, Paradise Point Resort & Spa, or San Diego Mission Bay Resort, which have been recommended by KAYAK users as great for couples.

Where to stay in Mission Bay?

Our map will help you find the perfect hotel in Mission Bay, San Diego by showing you the exact location of each hotel.

What Mission Bay hotel guests are talking about

Show all

What Mission Bay hotel guests are talking about

Hotels about topic

Show all
Bahia Resort Hotel - San Diego - Pool
Bahia Resort Hotel
8 Very good
Mission Bay1,087 ﷼+
1,087 ﷼+
Parking
Free Wi-Fi
Pool
Pet friendly
The Dana on Mission Bay - San Diego - Building
The Dana on Mission Bay
8 Very good
Mission Bay702 ﷼+
702 ﷼+
Pool
Pet friendly
Air Conditioning
The Wayfarer San Diego
8.5 Very good
Mission Bay903 ﷼+
903 ﷼+
Free Wi-Fi
Pool
Air Conditioning
Hyatt Regency Mission Bay Spa And Marina
8 Very good
Mission Bay1,049 ﷼+
1,049 ﷼+
Free Wi-Fi
Pool
Pet friendly
Air Conditioning
Catamaran Resort Hotel and Spa
7.3 Good
Mission Bay1,188 ﷼+
1,188 ﷼+
Free Wi-Fi
Pool
Pet friendly
Air Conditioning

Popular topics